{
  "_id": "6a102350acfb0bcc41c8d5ce",
  "Package": "IFC",
  "Encoding": "UTF-8",
  "Type": "Package",
  "Title": "Tools for Imaging Flow Cytometry",
  "Version": "0.2.1.809",
  "Date": "2026-05-13",
  "Maintainer": "Yohann Demont <git.demont@gmail.com>",
  "Authors@R": "c(person(given = 'Yohann', family = 'Demont', email = 'git.demont@gmail.com', role = c('aut', 'cre')), person(given = 'Gautier', family = 'Stoll', role = 'ctb'), person(given = 'Guido', family = 'Kroemer', role = 'ldr'), person(given = 'Jean-Pierre', family = 'Marolleau', role = 'ldr'), person(given = 'Loïc', family = 'Garçon', role = 'ldr'))",
  "BugReports": "https://github.com/gitdemont/IFC/issues",
  "Description": "Contains several tools to treat imaging flow cytometry\ndata from 'ImageStream®' and 'FlowSight®' cytometers ('Amnis®'\n'Cytek®'). Provides an easy and simple way to read and write\n.fcs, .rif, .cif and .daf files. Information such as masks,\nfeatures, regions and populations set within these files can be\nretrieved for each single cell. In addition, raw data such as\nimages stored can also be accessed. Users, may hopefully\nincrease their productivity thanks to dedicated functions to\nextract, visualize, manipulate and export 'IFC' data. Toy data\nexample can be installed through the 'IFCdata' package of\napproximately 32 MB, which is available in a 'drat' repository\n<https://gitdemont.github.io/IFCdata/>. See file 'COPYRIGHTS'\nand file 'AUTHORS' for a list of copyright holders and authors.",
  "Copyright": "file inst/COPYRIGHTS",
  "License": "GPL-3",
  "Additional_repositories": "https://gitdemont.github.io/IFCdata/",
  "Config/pak/sysreqs": "cmake make libjpeg-dev libpng-dev libuv1-dev\nlibxml2-dev",
  "Repository": "https://gitdemont.r-universe.dev",
  "Date/Publication": "2026-05-13 15:14:48 UTC",
  "RemoteUrl": "https://github.com/gitdemont/ifc",
  "RemoteRef": "HEAD",
  "RemoteSha": "5999508079ad2b35db9d96750d9e5903424e4f51",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-13 17:38:27 UTC",
    "User": "root"
  },
  "Author": "Yohann Demont [aut, cre],\nGautier Stoll [ctb],\nGuido Kroemer [ldr],\nJean-Pierre Marolleau [ldr],\nLoïc Garçon [ldr]",
  "MD5sum": "d8222c7ac531a6c4a91c0423858c030a",
  "_user": "gitdemont",
  "_type": "src",
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  "_created": "2026-05-13T17:38:27.000Z",
  "_published": "2026-05-22T09:35:12.768Z",
  "_distro": "noble",
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  "_topics": [
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    "cytometry-data",
    "flow",
    "flow-cytometry",
    "flow-cytometry-analysis",
    "flow-cytometry-data",
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  "_devurl": "https://github.com/gitdemont/ifc",
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    "autoplot",
    "BatchReport",
    "buildBatch",
    "buildFeature",
    "buildGraph",
    "buildPopulation",
    "buildRegion",
    "checksumIFC",
    "data_add_features",
    "data_add_graphs",
    "data_add_pops",
    "data_add_regions",
    "data_rm_features",
    "data_rm_graphs",
    "data_rm_pops",
    "data_rm_regions",
    "data_to_DAF",
    "DisplayGallery",
    "ExportToBATCH",
    "ExportToDAF",
    "ExportToFCS",
    "ExportToGallery",
    "ExportToNumpy",
    "ExportToReport",
    "ExportToXIF",
    "ExtractFromDAF",
    "ExtractFromFCS",
    "ExtractFromXIF",
    "ExtractImages_toBase64",
    "ExtractImages_toFile",
    "ExtractImages_toMatrix",
    "ExtractImages_toMulti",
    "ExtractMasks_toBase64",
    "ExtractMasks_toFile",
    "ExtractMasks_toMatrix",
    "ExtractMasks_toMulti",
    "getAborted",
    "getFullTag",
    "getIFD",
    "getInfo",
    "getOffsets",
    "inv_smoothLinLog",
    "objectDisplay",
    "objectExtract",
    "objectParam",
    "paletteIFC",
    "plotGraph",
    "popsCompute",
    "popsCopy",
    "popsGetObjectsIds",
    "popsNetwork",
    "popsRename",
    "readFCS",
    "readIFC",
    "smoothLinLog",
    "subsetOffsets",
    "writeIFC"
  ],
  "_help": [
    {
      "page": "IFC-package",
      "title": "Tools for Imaging Flow Cytometry",
      "topics": [
        "IFC-package",
        "IFC"
      ]
    },
    {
      "page": "autoplot",
      "title": "Automatic Parameters Detection for IFC Graphs",
      "topics": [
        "autoplot"
      ]
    },
    {
      "page": "BatchReport",
      "title": "Batch Generation of Graphical and Statistic Report",
      "topics": [
        "BatchReport"
      ]
    },
    {
      "page": "buildBatch",
      "title": "Batch Builder",
      "topics": [
        "buildBatch"
      ]
    },
    {
      "page": "buildFeature",
      "title": "IFC Feature Coercion",
      "topics": [
        "buildFeature"
      ]
    },
    {
      "page": "buildGraph",
      "title": "IFC Graph Coercion",
      "topics": [
        "buildGraph"
      ]
    },
    {
      "page": "buildPopulation",
      "title": "IFC Population Coercion",
      "topics": [
        "buildPopulation"
      ]
    },
    {
      "page": "buildRegion",
      "title": "IFC Region Coercion",
      "topics": [
        "buildRegion"
      ]
    },
    {
      "page": "checksumIFC",
      "title": "IFC Files Checksum",
      "topics": [
        "checksumIFC"
      ]
    },
    {
      "page": "data_add_features",
      "title": "Add Feature to IFC_data Object",
      "topics": [
        "data_add_features"
      ]
    },
    {
      "page": "data_add_graphs",
      "title": "Add Graphs to IFC_data Object",
      "topics": [
        "data_add_graphs"
      ]
    },
    {
      "page": "data_add_pops",
      "title": "Add Population to IFC_data Object",
      "topics": [
        "data_add_pops"
      ]
    },
    {
      "page": "data_add_regions",
      "title": "Add Region to IFC_data Object",
      "topics": [
        "data_add_regions"
      ]
    },
    {
      "page": "data_rm_features",
      "title": "Remove Features from an IFC_data Object",
      "topics": [
        "data_rm_features"
      ]
    },
    {
      "page": "data_rm_graphs",
      "title": "Remove Graph from an IFC_data Object",
      "topics": [
        "data_rm_graphs"
      ]
    },
    {
      "page": "data_rm_pops",
      "title": "Remove Population from an IFC_data Object",
      "topics": [
        "data_rm_pops"
      ]
    },
    {
      "page": "data_rm_regions",
      "title": "Remove Region from an IFC_data Object",
      "topics": [
        "data_rm_regions"
      ]
    },
    {
      "page": "data_to_DAF",
      "title": "DAF File Writer",
      "topics": [
        "data_to_DAF"
      ]
    },
    {
      "page": "DisplayGallery",
      "title": "Gallery Display",
      "topics": [
        "DisplayGallery"
      ]
    },
    {
      "page": "ExportToBATCH",
      "title": "Batch File Writer",
      "topics": [
        "ExportToBATCH"
      ]
    },
    {
      "page": "ExportToDAF",
      "title": "DAF File Writer",
      "topics": [
        "ExportToDAF"
      ]
    },
    {
      "page": "ExportToFCS",
      "title": "FCS File Writer",
      "topics": [
        "ExportToFCS"
      ]
    },
    {
      "page": "ExportToGallery",
      "title": "Gallery Export",
      "topics": [
        "ExportToGallery"
      ]
    },
    {
      "page": "ExportToNumpy",
      "title": "Numpy Export",
      "topics": [
        "ExportToNumpy"
      ]
    },
    {
      "page": "ExportToReport",
      "title": "Graphical and Statistic Report Generation",
      "topics": [
        "ExportToReport"
      ]
    },
    {
      "page": "ExportToXIF",
      "title": "RIF/CIF File Writer",
      "topics": [
        "ExportToXIF"
      ]
    },
    {
      "page": "ExtractFromDAF",
      "title": "DAF File Reader",
      "topics": [
        "ExtractFromDAF"
      ]
    },
    {
      "page": "ExtractFromFCS",
      "title": "FCS File Reader",
      "topics": [
        "ExtractFromFCS"
      ]
    },
    {
      "page": "ExtractFromXIF",
      "title": "RIF/CIF File Reader",
      "topics": [
        "ExtractFromXIF"
      ]
    },
    {
      "page": "ExtractImages_toBase64",
      "title": "Shortcut for Batch Images Extraction to Base64",
      "topics": [
        "ExtractImages_toBase64"
      ]
    },
    {
      "page": "ExtractImages_toFile",
      "title": "Shortcut for Batch Images Extraction to Files",
      "topics": [
        "ExtractImages_toFile"
      ]
    },
    {
      "page": "ExtractImages_toMatrix",
      "title": "Shortcut for Batch Images Extraction to Matrices/Arrays",
      "topics": [
        "ExtractImages_toMatrix"
      ]
    },
    {
      "page": "ExtractImages_toMulti",
      "title": "Shortcut for Batch Images Extraction to Multichannel Tiff",
      "topics": [
        "ExtractImages_toMulti"
      ]
    },
    {
      "page": "ExtractMasks_toBase64",
      "title": "Shortcut for Batch Masks Extraction to Base64",
      "topics": [
        "ExtractMasks_toBase64"
      ]
    },
    {
      "page": "ExtractMasks_toFile",
      "title": "Shortcut for Batch Masks Extraction to Files",
      "topics": [
        "ExtractMasks_toFile"
      ]
    },
    {
      "page": "ExtractMasks_toMatrix",
      "title": "Shortcut for Batch Masks Extraction to Matrices/Arrays",
      "topics": [
        "ExtractMasks_toMatrix"
      ]
    },
    {
      "page": "ExtractMasks_toMulti",
      "title": "Shortcut for Batch Masks Extraction to Multichannel Tiff",
      "topics": [
        "ExtractMasks_toMulti"
      ]
    },
    {
      "page": "gen_altnames",
      "title": "Alternative Names Generator",
      "topics": [
        "gen_altnames"
      ]
    },
    {
      "page": "getAborted",
      "title": "Aborted Batch Files Retrieval",
      "topics": [
        "getAborted"
      ]
    },
    {
      "page": "getFullTag",
      "title": "Image Field Directory Full Tag Retrieval",
      "topics": [
        "getFullTag"
      ]
    },
    {
      "page": "getIFD",
      "title": "RIF/CIF Image Field Directories Extraction",
      "topics": [
        "getIFD"
      ]
    },
    {
      "page": "getInfo",
      "title": "IFC File Information Extraction",
      "topics": [
        "getInfo"
      ]
    },
    {
      "page": "getOffsets",
      "title": "RIF/CIF File Image Field Directories Offsets Extraction",
      "topics": [
        "getOffsets"
      ]
    },
    {
      "page": "inv_smoothLinLog",
      "title": "Inverse Smooth LinLog Transformation",
      "topics": [
        "inv_smoothLinLog"
      ]
    },
    {
      "page": "objectCleanse",
      "title": "Object Cleanser",
      "topics": [
        "objectCleanse"
      ]
    },
    {
      "page": "objectDisplay",
      "title": "Object Display",
      "topics": [
        "objectDisplay"
      ]
    },
    {
      "page": "objectExtract",
      "title": "Object Extraction",
      "topics": [
        "objectExtract"
      ]
    },
    {
      "page": "objectParam",
      "title": "Object Extraction Parameters Definition",
      "topics": [
        "objectParam"
      ]
    },
    {
      "page": "paletteIFC",
      "title": "R/IDEAS Color Palette Mapping",
      "topics": [
        "paletteIFC"
      ]
    },
    {
      "page": "plotGraph",
      "title": "Plot and Stats Computation for IFC Graph",
      "topics": [
        "plotGraph"
      ]
    },
    {
      "page": "popsCompute",
      "title": "IFC_pops Computation",
      "topics": [
        "popsCompute"
      ]
    },
    {
      "page": "popsCopy",
      "title": "Copy Populations from One File to Another File",
      "topics": [
        "popsCopy"
      ]
    },
    {
      "page": "popsGetObjectsIds",
      "title": "IFC_pops Object Numbers",
      "topics": [
        "popsGetObjectsIds"
      ]
    },
    {
      "page": "popsNetwork",
      "title": "IFC_pops Network Display",
      "topics": [
        "popsNetwork"
      ]
    },
    {
      "page": "popsRename",
      "title": "Populations Renaming",
      "topics": [
        "popsRename"
      ]
    },
    {
      "page": "readFCS",
      "title": "FCS File Parser",
      "topics": [
        "readFCS"
      ]
    },
    {
      "page": "readIFC",
      "title": "IFC Files Generic Reader",
      "topics": [
        "readIFC"
      ]
    },
    {
      "page": "smoothLinLog",
      "title": "Smooth LinLog Transformation",
      "topics": [
        "smoothLinLog"
      ]
    },
    {
      "page": "subsetOffsets",
      "title": "IFC_offset Subsetting",
      "topics": [
        "subsetOffsets"
      ]
    },
    {
      "page": "writeIFC",
      "title": "IFC Files Generic Writer",
      "topics": [
        "writeIFC"
      ]
    }
  ],
  "_readme": "https://github.com/gitdemont/ifc/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "bslib",
    "cachem",
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